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5 Common marine petrol inboard problems and how to fix them

two engines in an engine bay with engine hatch open

Have you ever gone to go boating only to have something go wrong with your engine?
Chances are, one of these 5 common marine petrol inboard problems has happened to you.

Keep reading and I’ll show you how to identify, diagnose, fix, and prevent these marine engine issues from ruining your next trip.


Common Marine Petrol Inboard Problems:

  1. Water in cylinders
  2. Overheating
  3. Voltage issues
  4. Bad fuel
  5. Failed starter motor

1. Water in Cylinders (Petrol Inboard Engine)

How It Happens

One of the most common marine petrol inboard problems is water entering the cylinders. This usually happens via the exhaust manifolds, especially if they’ve failed or if the exhaust elbows are mounted too low.

There are two main entry points:

  • Failed exhaust manifolds
  • Exhaust risers or elbows mounted too low

Low Exhaust Manifolds and Riser Types

There are two types of risers used on marine petrol inboard engines:

  • Standard risers: Exit the manifold and turn straight down.
marine exhaust standard height riser

  • High risers: Go up first, then turn down to meet the exhaust.
marine exhaust high riser

If your exhaust system is mounted too low in the engine bay, water can backflow or siphon into the cylinders—one of the most damaging petrol inboard engine problems.

Failed Exhaust Manifolds

Exhaust manifolds are a serviceable component in any petrol inboard system. Most commonly, they corrode internally over time, especially in saltwater environments.

Even newer manifolds can suffer from:

  • Cracking
  • Pinholes
  • Gasket failures

How to Identify Water in Cylinders

Water in your cylinders may show symptoms like:

  • Rough running
  • No start
  • Engine turning over slowly

These are easy to confuse with other inboard petrol engine problems like a seized engine or flat battery.

Pro Tip: Remove the spark plugs. If you see beading or droplets of water on the plugs, you’ve got water intrusion.

close up of a spark plug showing water damage

What to Do If You Find Water

Safety Warning: Turning your engine over with spark plugs removed can be dangerous due to fuel vapours. Always isolate your spark and fuel systems. If you’re unsure, call a qualified marine mechanic.

After safely purging the water:

  • Spray WD-40 or Inox into each cylinder
  • This helps prevent corrosion caused by moisture and air exposure

How to Fix This Marine Engine Issue

  • Replace damaged manifolds or risers
  • If necessary, install high risers
  • Always clean mating surfaces and use new gaskets

How to Prevent Water in Cylinders

  • Monitor manifold condition: External corrosion is a clue to internal decay
  • Stick to regular service intervals
  • Listen to your engine—mechanical sympathy goes a long way in preventing failures

2. Overheating in Marine Petrol Inboards

How It Happens

Overheating is another one of the most frequent petrol inboard engine issues. It can occur due to:

  • Clogged sea strainers
close up of a clogged sea strainer
  • Blocked raw water pick-ups
  • Failed impellers or thermostats
  • Clogged engine coolers (calcium build-up)
  • Damaged sterndrive water fittings
  • Collapsed or perished hoses

How to Identify Overheating

  • Your temperature gauge or engine alarm will alert you
close up of a coolant temperature gauge
  • Most petrol inboard engines run between 70°C and 90°C
  • Overheating typically starts at 100°C or above

How to Fix an Overheating Marine Engine

Follow the raw water path from:

  1. Water intake
  2. Strainer
  3. Raw water pump
  4. Coolers or thermostat
  5. Exhaust manifolds/risers
  6. Exhaust outlet

Common fix actions:

  • Clean or replace sea strainers
  • Replace impellers or thermostats
  • Clear blockages in coolers and manifolds

How to Prevent Overheating

  • Regularly inspect your cooling system
  • Don’t ignore rising temps—act early
  • Stick to your marine engine service schedule

3. Voltage Issues in Marine Inboard Engines

How It Happens

Voltage problems are often caused by:

  • Corroded battery terminals
close up of Corroded battery terminals
  • Loose or damaged earths
  • Poor-quality battery connections

These electrical issues often lead to starting problems, fault codes, or intermittent performance issues.

How to Diagnose a Voltage Problem

  • Check for 12V+ at the starter motor
  • Make sure the engine turns freely by hand
  • Rule out mechanical faults first

Fixing Voltage Issues

  • Start at the battery, check voltages step by step
  • Clean or replace bad connections
  • Replace or recharge weak batteries

Preventing Voltage-Related Engine Problems

  • Spray electrical components with water dispersant
  • Charge your batteries properly
  • Check terminals regularly

4. Bad Fuel in a Petrol Inboard Engine

How It Happens

One of the most common boat engine problems is using stale or contaminated fuel, which can lead to:

  • No start
  • Engine misfiring
  • Power loss

Contaminated fuel usually smells sour (like vinegar), appears dark, or has visible water or debris in fuel bowls.

How to Identify Bad Fuel

  • Smell the fuel (briefly!)
  • Inspect fuel filters and bowls for water or gunk
petrol fuel mixed with water and debris

How to Fix Bad Fuel Issues

  • Drain the fuel tank
  • Replace fuel filters
  • Refill with premium fuel
  • Add a fuel conditioner like Fuel Doctor

How to Prevent Fuel Problems

  • Use premium fuels and add conditioners
  • Check fuel regularly
  • Stick to fuel system maintenance schedules

5. Failed Starter Motor (Common Starting Issue)

How It Happens

Marine starter motors are prone to failure because:

  • They’re mounted low in the bilge
  • Bilge water or leaks often flood them
  • Moisture leads to internal corrosion
close up of a heavily Corroded starter motor

How to Identify Starter Motor Failure

  • Multimeter reads 12.4V+ at starter, but engine doesn’t crank
  • Starter may make a whirring noise
  • Turn the engine over manually to rule out seizing

How to Fix a Starter Motor Problem

  • Isolate engine power
  • Remove starter for bench testing
  • Replace it if necessary

How to Prevent Starter Motor Issues

  • Keep the bilge dry
  • Use WD-40 or Inox to protect terminals and wiring

Conclusion: Keep Your Boat Reliable

These are just some of the most common marine petrol inboard problems I see in the field. With some basic knowledge, mechanical sympathy, and a few tools, you can solve many issues before they become serious.

And if you’re not confident doing it yourself—call a marine mechanic before it gets worse.


Explore More on The Everyday Captain

Looking for more boating maintenance tips, troubleshooting guides, and actionable advice for petrol inboard engine repairs?

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